PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0958
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 159aa    MW: 17772.2 Da    PI: 7.9943
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0958genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY96.27.6e-3021132123
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                  +++ +se+vCyv+CnfCntilavsvP++slfk vtvrCGhC++llsvn+ +++q+++ ++  +++   ++ e             +++e+ s+s+ ++
  Gh_A09G0958   2 SLDLASERVCYVHCNFCNTILAVSVPYNSLFKFVTVRCGHCANLLSVNMGTSQQTVPIQDA-QKQQIINIDE-----------DPSNKECGSSSKCNK 87 
                  567799**************************************************99996.3322222222...........222222222222222 PP

        YABBY 100 kl..senedeevprvppvirPPekrq 123
                  ++   ++ ++e+pr+pp+  P  k q
  Gh_A09G0958  88 QFsgFDSAQNEAPRMPPIRLPYAKAQ 113
                  22112456677777777766766666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.6E-30695IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSLDLASERV CYVHCNFCNT ILAVSVPYNS LFKFVTVRCG HCANLLSVNM GTSQQTVPIQ  60
DAQKQQIINI DEDPSNKECG SSSKCNKQFS GFDSAQNEAP RMPPIRLPYA KAQCIVDTIR  120
LNWAHFPHIH FGLKLEGNKQ AKLDQSFADQ GAQKSNPYY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.234986e-96boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5788087e-61JX578808.1 Gossypium hirsutum clone NBRI_GE10906 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485199.13e-97PREDICTED: putative axial regulator YABBY 2
SwissprotQ9XFB03e-48YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A0B0PA211e-101A0A0B0PA21_G
STRINGVIT_06s0009g00880.t019e-64(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-49YABBY family protein